RELEASE NOTES
IMPC Data Release 22.0 Notes
4 November 2024
Summary
Number of phenotyped genes: 9,073
Number of phenotyped mutant lines: 9,774
Number of phenotype calls: 111,485
Statistical package: OpenStats (1.18.0)
Genome Assembly: Mus musculus (GRCm38)
Highlights
Release notes
Represents a major data release.
This release includes:
- Approximately 2.9 million more data points.
- An additional 4924 phenotype calls.
- The processing of late adult data has changed in this release to take into account body weight measurements within a 21 day window centred around the date of the experiment compared to the 9 day window previously used. Early adult data continues to be processed as in previous releases to take into account body weight measurements within a 9 day window centred around the date of the experiment.
- The processing of legacy data generated before IMPC has been changed to take into account body weight measurements as specified for the procedures in IMPReSS. Notably this has changed some of the DEXA phenotype calls for the legacy lines, for example see Akt2.
Total number of lines and specimens in DR 22.0
| CCP-IMG | 383 | 3,954 | 7,077 |
| MRC Harwell | 846 | 7,523 | 20,700 |
| UC Davis | 1,575 | 9,597 | 39,873 |
| RBRC | 116 | 2,314 | 2,687 |
| KMPC | 103 | 3,127 | 3,906 |
| WTSI | 1,621 | 5,364 | 18,660 |
| TCP | 778 | 9,539 | 31,647 |
| BCM | 1,215 | 9,694 | 36,076 |
| ICS | 239 | 2,619 | 3,882 |
| HMGU | 538 | 7,617 | 10,739 |
| JAX | 2,128 | 15,851 | 59,734 |
| MARC | 233 | 1,858 | 3,588 |
Experimental data and quality checks
| categorical | 27,569,636 |
| time series * | 28,688,694 |
| image record * | 834,196 |
| unidimensional | 24,085,684 |
| ontological * | 2,025,264 |
| text * | 643,552 |
Distribution of phenotype annotations
Production status
Overall
ES Cell Null Lines
ES Cell Conditional Lines
Crispr Null Lines
Crispr Conditional Lines
Phenotyping
By Center
ES Cell Null Lines
ES Cell Conditional Lines
Crispr Null Lines
Crispr Conditional Lines
Phenotyping
More charts and status information are available from our mouse tracking service GenTaR.
Phenotype associations
Trends
Genes/Mutant Lines/MP CallsBy Data Release
Data Points by Data Release
Previous releases
- Release 22.0 notes
- Release 21.1 notes
- Release 21.0 notes
- Release 20.1 notes
- Release 20.0 notes
- Release 19.1 notes
- Release 19.0 notes
- Release 18.0 notes
- Release 17.0 notes
- Release 16.0 notes
- Release 15.1 notes
- Release 15.0 notes
- Release 14.0 notes
- Release 13.0 notes
- Release 12.0 notes
- Release 11.0 notes
- Release 10.1 notes
- Release 10.0 notes
- Release 9.2 notes
- Release 9.1 notes
- Release 8.0 notes
- Release 7.0 notes
- Release 6.1 notes
- Release 6.0 notes
- Release 5.0 notes
- Release 4.3 notes
- Release 4.2 notes
- Release 4.0 notes
- Release 3.4 notes
- Release 3.3 notes
- Release 3.2 notes
- Release 3.1 notes
- Release 3.0 notes
- Release 2.0 notes
- Release 1.1 notes
- Release 1.0 notes