Histopathology data for Hif1an

Score Definitions

Severity Score:

  • 0 = Normal,
  • 1 = Mild (observation barely perceptible and not believed to have clinical significance),
  • 2 = Moderate (observation visible but involves minor proportion of tissue and clinical consequences of observation are most likely subclinical),
  • 3 = Marked (observation clearly visible involves a significant proportion of tissue and is likely to have some clinical manifestations generally expected to be minor),
  • 4 = Severe (observation clearly visible involves a major proportion of tissue and clinical manifestations are likely associated with significant tissue dysfunction or damage)

Significance Score:

  • 0 = Not significant: Interpreted by the histopathologist to be a finding attributable to background strain (e.g. low-incidence hydrocephalus, microphthalmia) or incidental to mutant phenotype (e.g. hair-induced glossitis, focal hyperplasia, mild mononuclear cell infiltrate).
  • 1 = Significant: Interpreted by the histopathologist as a finding not attributable to background strain and not incidental to mutant phenotype.


Zyg Sex Mouse Tissue MPATH Process Term Severity Score Significance Score MPATH Diagnostic PATO Descriptor Free Text Images
HOM F #2 Kidney [MA:0000368]
HOM F #2 Urinary bladder [MA:0000380]
HOM M #1 Spinal cord [MA:0000216]
HOM F #2 Adrenal gland [MA:0000116]
HOM F #4 Spinal cord [MA:0000216]
HOM M #3 Pancreas [MA:0000120]
HOM M #1 Femur [MA:0001359]
HOM F #4 Femur [MA:0001359]
HOM F #2 Spleen [MA:0000141]
HOM M #3 Small intestine [MA:0000337]
HOM F #2 Ovary [MA:0000384]
HOM F #2 Sternum [MA:0001331]
HOM M #1 Seminal vesicle [MA:0000410]
HOM F #2 Femur [MA:0001359]
HOM F #4 Ovary [MA:0000384]
HOM F #4 Brown adipose tissue [MA:0000057]
HOM M #3 Trigeminal V ganglion [MA:0001080]
HOM M #1 Brown adipose tissue [MA:0000057]
HOM M #1 Epididymis [MA:0000397]
HOM M #3 Tibia [MA:0001361]
HOM F #2 Large intestine [MA:0000333]
HOM F #2 Ear [MA:0000236]
HOM M #1 Large intestine [MA:0000333]
HOM M #3 Liver [MA:0000358]
HOM M #3 Thyroid
HOM M #3 Gall bladder [MA:0000356]
HOM F #2 Skin [MA:0000151]
HOM M #3 Femur [MA:0001359]
HOM F #4 Trigeminal V ganglion [MA:0001080]
HOM M #1 Pancreas [MA:0000120]
HOM F #2 Skeletal muscle [MA:0003148]
HOM F #2 Heart [MA:0000072]
HOM F #4 Spleen [MA:0000141]
HOM M #1 Sternum [MA:0001331]
HOM M #1 Heart [MA:0000072]
HOM F #2 Eye [MA:0000261]
HOM F #2 Spinal cord [MA:0000216]
HOM F #2 Thymus [MA:0000142]
HOM F #4 Uterus [MA:0000389]
HOM M #1 Liver [MA:0000358]
HOM M #3 Nasal cavity [MA:0000284]
HOM F #2 Mammary gland [MA:0000145]
HOM M #3 Trachea [MA:0000441]
HOM F #2 Liver [MA:0000358]
HOM M #1 Thymus [MA:0000142]
HOM M #1 Knee joint [MA:0000471]
HOM F #4 Salivary gland [MA:0000346]
HOM F #4 Small intestine [MA:0000337]
HOM M #1 Tooth [MA:0000348]
HOM F #4 Tibia [MA:0001361]
HOM M #3 Sternum [MA:0001331]
HOM F #2 Trachea [MA:0000441]
HOM F #2 Stomach [MA:0000353]
HOM M #3 Tooth [MA:0000348]
HOM F #4 Kidney [MA:0000368]
HOM M #3 Knee joint [MA:0000471]
HOM F #2 Lung [MA:0000415]
HOM M #3 Eye [MA:0000261]
HOM F #4 Urinary bladder [MA:0000380]
HOM F #4 Tongue [MA:0000347]
HOM M #3 Thymus [MA:0000142]
HOM M #3 Epididymis [MA:0000397]
HOM F #2 Nasal cavity [MA:0000284]
HOM M #3 Spinal cord [MA:0000216]
HOM F #4 Brain [MA:0000168]
HOM M #1 Lung [MA:0000415]
HOM M #1 Nasal cavity [MA:0000284]
HOM F #4 Adrenal gland [MA:0000116]
HOM M #1 Stomach [MA:0000353]
HOM M #1 Trachea [MA:0000441]
HOM F #4 Lymph node [MA:0000139]
HOM F #2 Tooth [MA:0000348]
HOM M #3 Lung [MA:0000415]
HOM M #3 Prostate gland [MA:0000404]
HOM F #2 Knee joint [MA:0000471]
HOM M #1 Lymph node [MA:0000139]
HOM M #3 Heart [MA:0000072]
HOM M #3 Brain [MA:0000168]
HOM M #1 Eye [MA:0000261]
HOM M #3 Ear [MA:0000236]
HOM M #3 Tongue [MA:0000347]
HOM F #4 Eye [MA:0000261]
HOM F #4 Sciatic nerve [MA:0001172]
HOM M #1 Sciatic nerve [MA:0001172]
HOM M #3 Skin [MA:0000151]
HOM M #3 Stomach [MA:0000353]
HOM M #3 Skeletal muscle [MA:0003148]
HOM F #4 Esophagus [MA:0000352]
HOM F #2 Bone [MA:0001459]
HOM M #1 Bone [MA:0001459]
HOM F #2 Pancreas [MA:0000120]
HOM F #4 Bone [MA:0001459]
HOM F #4 Skin [MA:0000151]
HOM M #3 Spleen [MA:0000141]
HOM M #1 Esophagus [MA:0000352]
HOM F #4 Skeletal muscle [MA:0003148]
HOM M #1 Skeletal muscle [MA:0003148]
HOM M #1 Bone marrow [MA:0000134]
HOM M #3 Kidney [MA:0000368]
HOM M #3 Large intestine [MA:0000333]
HOM M #1 Skin [MA:0000151]
HOM F #4 Bone marrow [MA:0000134]
HOM M #1 Trigeminal V ganglion [MA:0001080]
HOM M #1 Ear [MA:0000236]
HOM F #4 Thyroid
HOM F #2 Trigeminal V ganglion [MA:0001080]
HOM F #4 Ear [MA:0000236]
HOM M #1 Gall bladder [MA:0000356]
HOM M #1 Thyroid
HOM F #2 Thyroid
HOM F #2 Gall bladder [MA:0000356]
HOM F #4 Gall bladder [MA:0000356]
HOM F #4 Stomach [MA:0000353]
HOM F #2 Brown adipose tissue [MA:0000057]
HOM F #2 Bone marrow [MA:0000134]
HOM F #4 Pancreas [MA:0000120]
HOM F #4 Large intestine [MA:0000333]
HOM M #1 Prostate gland [MA:0000404]
HOM M #1 Tongue [MA:0000347]
HOM M #3 Lymph node [MA:0000139]
HOM M #1 Spleen [MA:0000141]
HOM M #3 Salivary gland [MA:0000346]
HOM F #2 Sciatic nerve [MA:0001172]
HOM M #1 Testis [MA:0000411]
HOM F #2 Tongue [MA:0000347]
HOM F #2 Uterus [MA:0000389]
HOM F #4 Sternum [MA:0001331]
HOM F #4 Heart [MA:0000072]
HOM M #1 Tibia [MA:0001361]
HOM F #4 Liver [MA:0000358]
HOM F #4 Mammary gland [MA:0000145]
HOM M #3 Adrenal gland [MA:0000116]
HOM F #2 Tibia [MA:0001361]
HOM F #4 Thymus [MA:0000142]
HOM F #2 Esophagus [MA:0000352]
HOM M #1 Urinary bladder [MA:0000380]
HOM M #1 Adrenal gland [MA:0000116]
HOM M #3 Esophagus [MA:0000352]
HOM M #1 Small intestine [MA:0000337]
HOM M #1 Kidney [MA:0000368] 3 0 unilateral
HOM F #2 Lymph node [MA:0000139]
HOM M #3 Urinary bladder [MA:0000380]
HOM F #4 Tooth [MA:0000348]
HOM M #3 Brown adipose tissue [MA:0000057]
HOM F #4 Knee joint [MA:0000471]
HOM M #1 Salivary gland [MA:0000346]
HOM M #3 Sciatic nerve [MA:0001172]
HOM M #3 Bone marrow [MA:0000134]
HOM F #2 Brain [MA:0000168]
HOM M #3 Bone [MA:0001459]
HOM F #4 Lung [MA:0000415]
HOM M #3 Testis [MA:0000411]
HOM M #1 Brain [MA:0000168]
HOM F #2 Salivary gland [MA:0000346]
HOM M #3 Seminal vesicle [MA:0000410]
HOM F #4 Nasal cavity [MA:0000284]
HOM F #2 Small intestine [MA:0000337]
HOM F #4 Trachea [MA:0000441]

Associated histopathology images

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